Original Article

Genetic Linkage Analysis of DFNB3, DFNB9 and DFNB21 Loci in GJB2 Negative Families with Autosomal Recessive Non-syndromic Hearing Loss

Abstract

Background: Autosomal recessive non-syndromic hearing loss (ARNSHL) is the most common hereditary form of deafness, and exhibits a great deal of genetic heterogeneity. So far, more than seventy various DFNB loci have been mapped for ARNSHL by linkage analysis. The contribution of three common DFNB loci including DFNB3, DFNB9, DFNB21 and gap junction beta-2 (GJB2) gene mutations in ARNSHL was investigated in south of Iran for the first time.

Methods: In this descriptive study, we investigated sixteen large families with at least two affected individuals. After DNA extraction, GJB2 gene mutations were analyzed using direct sequencing method. Negative samples for GJB2 gene mutations were analyzed for the linkage to DFNB3, DFNB9 and DFNB21 loci by genotyping the corresponding short tandem repeat (STR) markers using polymerase chain reaction (PCR) and polyacrylamide gel electrophoresis (PAGE) methods.

Results: GJB2 mutations (283G>A and 29delT) were causes of hearing loss in 12.5% of families with ARNSHL and no evidence of linkage were found for any of DFNB3, DFNB9 and DFNB21 loci.

Conclusion: GJB2 mutations are associated with ARNSHL. We failed to find linkage of the DFNB3, DFNB9 and DFNB21 loci among GJB2 negative families. Therefore, further studies on large-scale population and other loci will be needed to find conclusively linkage of DFNB loci and ARNSHL in the future.

 

Dai P, Yu F, Han B, Liu X, Wang G, Li Q, et al. (2009). GJB2 mutation spectrum in 2,063 Chinese patients with nonsyndromic hearing impairment. J Transl Med, 14;7:26.

Vitor G.L. Dantas, Karina Lezirovitz, Guilherme L. Yamamoto, Carolina Fischin-ger Moura de Souza, Simone Gomes Ferreira, Regina C. Mingroni-Netto (2014). C.G2114A MYH9 mutation (DFNA17) causes non-syndromic autosomal dominant hearing loss in a Brazilian family. Genet Mol Biol, 37(4):616-21.

Ramzan K, Al-Owain M, Allam R, Berhan A, Abuharb G, Taibah K, et al. (2013). Homozygosity mapping identifies a novel GIPC3 mutation causing congenital nonsy-ndromic hearing loss in a Saudi family. Gene, 521(1):195-9.

Wang Q, Lu C, Li N, Rao S, Shi Y, Han D, et al. (2004) Y-linked inheritance of non-syndromic hearing impairment in a large Chinese family. J Med Genet, 41(6):e80.

Duman D, Tekin M (2012). Autosomal recessive nonsyndromic deafness genes: a review. Front Biosci (Landmark Ed), 17:2213-36.

Van Camp G, Willems PJ, Smith R (1997). Nonsyndromic hearing impairment: unpara-lleled heterogeneity. Am J Hum Genet, 60(4):758-764.

Camp GV, Smith R. http://hereditaryhearinglo-ss.org. 04.03.2015.

Taylor KR, DeLuca AP, Shearer AE, Hildebrand MS, Black‐Ziegelbein E, Anand VN, et al. (2013). Audiogene: predicting hearing loss genotypes from phenotypes to guide genetic screening. Hum Mutat, 34(4):539-45.

Fattahi Z, Shearer AE, Babanejad M, Bazazzadegan N, Almadani SN, Nikzat N, et al. (2012). Screening for MYO15A gene mutations in autosomal recessive nonsynd-romic, GJB2 negative Iranian deaf population. Am J Med Genet A, 158A(8):1857-64.

Naghavi A, Nishimura C, Kahrizi K, Riazalhosseini Y, Bazazzadegan N, Mohseni M, et al. (2008). GJB2 mutations in Baluchi population. J Genet, 87(2):195-7.

Smith RJ, Robin NH (2002). Genetic testing for deafness GJB2 and SLC26A4 as causes of deafness. J Commun Disord, 35(4):367-77.

Najmabadi H, Kahrizi K (2014). Genetics of non-syndromic hearing loss in the Middle East. International journal of pediatric otorhinolaryngology. Int J Pediatr Otorhino-laryngol, 78(12):2026-36.

Friedman TB, Liang Y, Weber JL, Hinnant JT, Barber TD, Winata S, et al. (1995). A gene for congenital, recessive deafness DFNB3 maps to the pericentromeric region of chromosome 17. Nat Genet, 9(1):86-91.

Mahdieh N, Shirkavand A, Rabbani B, Tekin M, Akbari B, Akbari MT, et al. (2012). Screening of OTOF mutations in Iran: A novel mutation and review. Int J Pediatr Otorhinolaryngol ,76(11):1610-5.

Iwasa Y-i, Nishio S-y, Yoshimura H, Kanda Y, Kumakawa K, Abe S, et al. (2013). OTOF mutation screening in Japanese severe to profound recessive hearing loss patients. BMC Med Genet,14(1):95.

Miyagawa M, Nishio S-y, Ikeda T, Fukushima K, Usami S-i (2013). Massively parallel DNA sequencing successfully identifies new causative mutations in deafness genes in patients with cochlear implantation and EAS. PLoS One, 8(10):e75793.

Tabatabaiefar M, Alasti F, Zohour MM, Shariati L, Farrokhi E, Farhud D, et al. (2011). Genetic linkage analysis of 15 DFNB loci in a group of Iranian families with autosomal recessive hearing loss. Iran J Public Health, 40(2):34-48.

Miller S, Dykes D, Polesky H (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res, 16(3):1215.

Chaleshtori MH, Farhud D, Patton M (2007). Congratulation to margaret chan familial and sporadic GJB2-Related Deafness in Iran: Review of Gene Mutations. Iran J Public Health, 36(1):1-14.

Shirmardi A, Farrokhi E, Khoshdel A, Anman iS, Soleimani M, Kasiri M (2009). Genetic study of 45 large pedigrees hearing and determine the frequency of mutations in the connexin 26 (GJB2) in Chahar Mahal va Bakhtiari. Journal of Shahrekord University of Medical Sciences, (in Persian), 10(4):16-21.

Najmabadi H, Nishimura C, Kahrizi K, Riazalhosseini Y, Malekpour M, Daneshi A, et al. (2005). GJB2 mutations: passage through Iran. Am J Med Genet A, 133A(2):132-7.

Davoudi-Dehaghani E, Fallah M-S, Shirzad T, Tavakkoly-Bazzaz J, Bagherian H, Zeinali S (2014). Reporting the presence of three different diseases causing GJB2 mutations in a consanguineous deaf family. Int J Audiol,53(2):128-31.

Tabatabaiefar M, Shariati L, Montazerzohour M, Ashrafi K (2010). Mutation analysis of GJB2 and GJB6 genes and the genetic linkage analysis of three common DFNB loci in the Iranian families with autosomal recessive non-syndromic hearing loss. Journal of Shahrekord University of Medical Sciences, (in Persian) 12(2):65-75.

Duman D, Sirmaci A, Cengiz FB, Ozdag H, Tekin M (2011). Screening of 38 genes identifies mutations in 62% of families with nonsyndromic deafness in Turkey. Genet Test Mol Biomarkers, 15(1-2):29-33.

Shearer AE, Hildebrand MS, Webster JA, Kahrizi K, Meyer NC, Jalalvand K, et al. (2009). Mutations in the first MyTH4 domain of MYO15A are a common cause of DFNB3 hearing loss. Laryngoscope, 119(4):727-33.

Liburd N, Ghosh M, Riazuddin S, Naz S, Khan S, Ahmed Z, et al. (2001). Novel mutations of MYO15A associated with profound deafness in consanguineous families and moderately severe hearing loss in a patient with Smith-Magenis syndrome. Hum Genet, 109(5):535-41.

Belguith H, Aifa-Hmani M, Dhouib H, Said MB, Mosrati MA, Lahmar I, et al. (2009). Screening of the DFNB3 locus: identification of three novel mutations of MYO15A associated with hearing loss and further suggestion for two distinctive genes on this locus. Genet Test Mol Biomarkers, 13(1):147-51

Sadeghi A, Sanati M, Alasti F, Hashemzadeh Chaleshtori M, Mahmoudian S, Ataei M (2009). Contribution of GJB2 mutations and Four common DFNB loci in autosomal recessive non-syndromic hearing impairment in Markazi and Qom provinces of Iran. Iran J Biotechnol, 7(2):108-211.

Shafique S, Siddiqi S, Schraders M, Oostrik J, Ayub H, Bilal A, et al. (2014). Genetic spectrum of autosomal recessive non-syndromic hearing loss in pakistani families. PloS one, 9(6):e100146.

Babanejad M, Fattahi Z, Bazazzadegan N, Nishimura C, Meyer N, Nikzat N, et al. (2012). A comprehensive study to determine heterogeneity of autosomal recessive nonsyndromic hearing loss in Iran. Am J Med Genet A, 158(10):2485-92.

Tabatabaiefar M, Zohour MM, Shariati L, Chaleshtori JS, Ashrafi K, Gholami A, et al. (2010). Mutation analysis of GJB2 and GJB6 genes and the genetic linkage analysis of five common DFNB loci in the Iranian families with autosomal recessive non-syndromic hearing loss. J Sci IR Iran, 21(2):105-12.

Choi B, Ahmed Z, Riazuddin S, Bhinder M, Shahzad M, Husnain T, et al. (2009). Identities and frequencies of mutations of the otoferlin gene (OTOF) causing DFNB9 deafness in Pakistan. Clin Genet, 75(3):237-43.

Wang D-Y, Wang Y-C, Weil D, Zhao Y-L, Rao S-Q, Zong L, et al. (2010). Screening mutations of OTOF gene in Chinese patients with auditory neuropathy, including a familial case of temperature-sensitive auditory neuropathy. BMC Med Genet,11(1):79.

Meyer NC, Alasti F, Nishimura CJ, Imanirad P, Kahrizi K, Riazalhosseini Y, et al. (2007). Identification of three novel TECTA mutations in Iranian families with autosomal recessive nonsyndromic hearing impairment at the DFNB21 locus. Am J Med Genet A,143(14):1623-9.

Files
IssueVol 45 No 5 (2016) QRcode
SectionOriginal Article(s)
Keywords
Autosomal recessive non-syndromic hearing loss DFNB loci Genetic linkage analys

Rights and permissions
Creative Commons License This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
How to Cite
1.
MASOUDI M, AHANGARI N, POURSADEGH ZONOUZI AA, POURSADEGH ZONOUZI A, NEJATIZADEH A. Genetic Linkage Analysis of DFNB3, DFNB9 and DFNB21 Loci in GJB2 Negative Families with Autosomal Recessive Non-syndromic Hearing Loss. Iran J Public Health. 2016;45(5):680-687.